Genome comparison of two Coccolithoviruses

Virol J. 2006 Mar 22:3:15. doi: 10.1186/1743-422X-3-15.

Abstract

Background: The Coccolithoviridae is a recently discovered family of viruses that infect the marine coccolithophorid Emiliania huxleyi. Following on from the sequencing of the type strain EhV-86, we have sequenced a second strain, EhV-163.

Results: We have sequenced approximately 80% of the EhV-163 genome, equating to more than 200 full length CDSs. Conserved and variable CDSs and a gene replacement have been identified in the EhV-86 and EhV-163 genomes.

Conclusion: The sequencing of EhV-163 has provided a wealth of information which will aid the re-annotating of the EhV-86 genome and identified a gene insertion in EhV-163.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Conserved Sequence
  • Genes, Viral / genetics
  • Genome, Viral*
  • Genomics
  • Phycodnaviridae / classification
  • Phycodnaviridae / genetics*
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid