ProMAT: protein microarray analysis tool

Amanda M White; Don S Daly; Susan M Varnum; Kevin K Anderson; Nikki Bollinger; Richard C Zangar

doi:10.1093/bioinformatics/btl093

ProMAT: protein microarray analysis tool

Bioinformatics. 2006 May 15;22(10):1278-9. doi: 10.1093/bioinformatics/btl093. Epub 2006 Apr 4.

Authors

Amanda M White¹, Don S Daly, Susan M Varnum, Kevin K Anderson, Nikki Bollinger, Richard C Zangar

Affiliation

¹ Statistical Sciences, Pacific Northwest National Laboratory Richland, WA 99354, USA. [email protected]

PMID: 16595561
DOI: 10.1093/bioinformatics/btl093

Abstract

Summary: ProMAT is a software tool for statistically analyzing data from enzyme-linked immunosorbent assay microarray experiments. The software estimates standard curves, sample protein concentrations and their uncertainties for multiple assays. ProMAT generates a set of comprehensive figures for assessing results and diagnosing process quality. The tool is available for Windows or Mac, and is distributed as open-source Java and R code.

Availability: ProMAT is available at http://www.pnl.gov/statistics/ProMAT. ProMAT requires Java version 1.5.0 and R version 1.9.1 (or more recent versions). ProMAT requires either Windows XP or Mac OS 10.4 or newer versions.

Publication types

Research Support, N.I.H., Extramural
Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

Algorithms*
Data Interpretation, Statistical
Enzyme-Linked Immunosorbent Assay / methods*
Protein Array Analysis / methods*
Software*
User-Computer Interface*

Grants and funding

CA117378/CA/NCI NIH HHS/United States