Assessing the role of aromatic residues in the amyloid aggregation of human muscle acylphosphatase

Protein Sci. 2006 Apr;15(4):862-70. doi: 10.1110/ps.051915806.

Abstract

Among the many parameters that have been proposed to promote amyloid fibril formation is the pi-stacking of aromatic residues. We have studied the amyloid aggregation of several mutants of human muscle acylphosphatase in which an aromatic residue was substituted with a non-aromatic one. The aggregation rate was determined using the Thioflavin T test under conditions in which the variants populated initially an ensemble of partially unfolded conformations. Substitutions in aggregation-promoting fragments of the sequence result in a dramatically decreased aggregation rate of the protein, confirming the propensity of aromatic residues to promote this process. Nevertheless, a statistical analysis shows that the measured decrease of aggregation rate following mutation arises predominantly from a reduction of hydrophobicity and intrinsic beta-sheet propensity. This suggests that aromatic residues favor aggregation because of these factors rather than for their aromaticity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acid Anhydride Hydrolases / chemistry*
  • Acid Anhydride Hydrolases / genetics
  • Acid Anhydride Hydrolases / metabolism
  • Acylphosphatase
  • Amino Acid Substitution
  • Amyloid / chemistry*
  • Amyloid / metabolism*
  • Benzothiazoles
  • Birefringence
  • Circular Dichroism
  • Congo Red / chemistry
  • Congo Red / metabolism
  • Data Interpretation, Statistical
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Muscles / metabolism*
  • Phase Transition
  • Phenylalanine / chemistry
  • Protein Structure, Secondary
  • Spectroscopy, Fourier Transform Infrared
  • Thiazoles / chemistry
  • Thiazoles / metabolism
  • Trifluoroethanol / metabolism
  • Trifluoroethanol / pharmacology
  • Tyrosine / chemistry

Substances

  • Amyloid
  • Benzothiazoles
  • Thiazoles
  • thioflavin T
  • Congo Red
  • Tyrosine
  • Phenylalanine
  • Trifluoroethanol
  • Acid Anhydride Hydrolases