Two-dimensional LNA/DNA arrays: estimating the helicity of LNA/DNA hybrid duplex

Chem Commun (Camb). 2006 Jul 5:(25):2675-7. doi: 10.1039/b603872g. Epub 2006 May 23.

Abstract

We measured the helical repeats of a non-natural nucleic acid, locked nucleic acid (LNA), by incorporating LNA strands into the outer arms of a DNA double crossover (DX) molecule; atomic force microscopy (AFM) imaging of the two-dimensional (2D) arrays self-assembled from these DX molecules allows us to derive the helical repeat of the LNA/DNA hetero-duplex to be 13.2 +/- 0.9 base pairs per turn.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • DNA / chemistry*
  • DNA / ultrastructure*
  • Microscopy, Atomic Force
  • Molecular Sequence Data
  • Nucleic Acid Denaturation
  • Nucleic Acid Hybridization
  • Oligonucleotide Array Sequence Analysis
  • Oligonucleotides
  • Oligonucleotides, Antisense / chemistry*
  • Oligonucleotides, Antisense / ultrastructure*
  • Temperature

Substances

  • Oligonucleotides
  • Oligonucleotides, Antisense
  • locked nucleic acid
  • DNA