Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Nat Biotechnol. 2006 Aug;24(8):997-1004. doi: 10.1038/nbt1232. Epub 2006 Jul 30.

Abstract

Alcanivorax borkumensis is a cosmopolitan marine bacterium that uses oil hydrocarbons as its exclusive source of carbon and energy. Although barely detectable in unpolluted environments, A. borkumensis becomes the dominant microbe in oil-polluted waters. A. borkumensis SK2 has a streamlined genome with a paucity of mobile genetic elements and energy generation-related genes, but with a plethora of genes accounting for its wide hydrocarbon substrate range and efficient oil-degradation capabilities. The genome further specifies systems for scavenging of nutrients, particularly organic and inorganic nitrogen and oligo-elements, biofilm formation at the oil-water interface, biosurfactant production and niche-specific stress responses. The unique combination of these features provides A. borkumensis SK2 with a competitive edge in oil-polluted environments. This genome sequence provides the basis for the future design of strategies to mitigate the ecological damage caused by oil spills.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Biodegradation, Environmental
  • Chromosome Mapping / methods*
  • Genome, Bacterial / genetics*
  • Halomonadaceae / genetics*
  • Halomonadaceae / metabolism*
  • Hydrocarbons / metabolism*
  • Molecular Sequence Data
  • Sequence Homology, Nucleic Acid

Substances

  • Hydrocarbons