Role of chromatin accessibility in the occupancy and transcription of the insulin gene by the pancreatic and duodenal homeobox factor 1

Mol Endocrinol. 2006 Dec;20(12):3133-45. doi: 10.1210/me.2006-0126. Epub 2006 Aug 10.

Abstract

The pancreatic and duodenal homeobox factor 1 (Pdx-1) is a Hox-like transcription factor that is responsible for the activation of the insulin gene. Previous studies have demonstrated the interaction in vitro of Pdx-1 with short (20-40 nucleotide) DNA fragments corresponding to A boxes of the insulin promoter. Precisely how Pdx-1 binds to DNA in the complex milieu of chromatin, however, has never been studied. In this study, we explored how Pdx-1-DNA interactions might be influenced by chromatin accessibility at the insulin gene in beta-cells (betaTC3) vs. pancreatic ductal cells (mPAC). We demonstrate that Pdx-1 occupies the endogenous insulin promoter in betaTC3 cells but not in mPAC cells, a finding that is independent of the intracellular Pdx-1 protein concentration. Based on micrococcal nuclease protection assays, the difference in promoter binding between the two cell types appears to be secondary to chromatin accessibility at predicted Pdx-1 binding sites between bp -126 to -296 (relative to the transcriptional start site) of the insulin promoter. Binding studies using purified Pdx-1 and reconstituted chromatin in vitro suggest that the positioning of a nucleosome(s) within this crucial region of the promoter might account for differences in chromatin accessibility. Consistent with these observations, fluorescence colocalization studies show that Pdx-1 does not occupy regions of compacted, nucleosome-rich chromatin within the nucleus. Our findings suggest a model whereby insulin transcription in the beta-cell is at least partially facilitated by enhanced chromatin accessibility within a crucial regulatory region between bp -126 to -296, thereby permitting occupancy by transactivators such as Pdx-1.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Animals
  • Cell Line, Tumor
  • Chromatin / chemistry
  • Chromatin / metabolism*
  • DNA / metabolism
  • Electrophoretic Mobility Shift Assay
  • Euchromatin / chemistry
  • Euchromatin / metabolism
  • Gene Expression Regulation*
  • Heterochromatin / chemistry
  • Heterochromatin / metabolism
  • Histones / metabolism
  • Homeodomain Proteins / analysis
  • Homeodomain Proteins / metabolism*
  • Insulin / genetics*
  • Insulin-Secreting Cells / metabolism*
  • Mice
  • Nucleosomes / chemistry
  • Nucleosomes / metabolism
  • Promoter Regions, Genetic
  • Trans-Activators / analysis
  • Trans-Activators / metabolism*
  • Transcription, Genetic
  • Transcriptional Activation

Substances

  • Chromatin
  • Euchromatin
  • Heterochromatin
  • Histones
  • Homeodomain Proteins
  • Insulin
  • Nucleosomes
  • Trans-Activators
  • pancreatic and duodenal homeobox 1 protein
  • DNA