Determination of Escherichia coli O types by allele-specific polymerase chain reaction: application to the O types involved in human septicemia

Diagn Microbiol Infect Dis. 2007 Feb;57(2):129-36. doi: 10.1016/j.diagmicrobio.2006.08.007. Epub 2006 Oct 3.

Abstract

Escherichia coli can be serotyped by determination of somatic (O), capsular (K), and flagellar (H) antigens, and clear associations exist between specific O antigens and pathogenic behavior. However, E. coli is very challenging to O type with traditional serologic methods, making new methods for E. coli somatic antigen detection highly desirable. Here, we describe a simple alternative molecular method for determination of the E. coli O type based on allele-specific polymerase chain reaction amplification of the 5' portion of the rfb locus. We present our application of this new method to the detection of the 12 principal O types (O1, O2, O4, O6, O7, O12, O15, O16, O18, O25, O75, and O157) found among bloodstream isolates of E. coli. This method allowed us to determine the O types of 153 strains previously typed using reference methods with an accuracy exceeding 90%. Moreover, some rough or nonagglutinating strains can be successfully typed.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles*
  • Bacteremia / diagnosis
  • Bacteremia / microbiology*
  • Bacterial Proteins / genetics
  • DNA Primers
  • Escherichia coli / classification*
  • Escherichia coli / genetics
  • Escherichia coli Infections / diagnosis
  • Escherichia coli Infections / microbiology
  • Humans
  • Multigene Family
  • O Antigens / classification*
  • Polymerase Chain Reaction / methods*
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Species Specificity

Substances

  • Bacterial Proteins
  • DNA Primers
  • O Antigens
  • rfb protein, Bacteria