A multi-step strategy to obtain crystals of the dengue virus RNA-dependent RNA polymerase that diffract to high resolution

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Feb 1;63(Pt 2):78-83. doi: 10.1107/S1744309106055084. Epub 2007 Jan 17.

Abstract

Dengue virus, a member of the Flaviviridae genus, causes dengue fever, an important emerging disease with several million infections occurring annually for which no effective therapy exists. The viral RNA-dependent RNA polymerase NS5 plays an important role in virus replication and represents an interesting target for the development of specific antiviral compounds. Crystals that diffract to 1.85 A resolution that are suitable for three-dimensional structure determination and thus for a structure-based drug-design program have been obtained using a strategy that included expression screening of naturally occurring serotype variants of the protein, the addition of divalent metal ions and crystal dehydration.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalysis
  • Cations, Divalent
  • Chlorides / chemistry
  • Chromatography, Ion Exchange
  • Crystallization
  • Crystallography, X-Ray
  • Dengue Virus / enzymology*
  • Magnesium Chloride / chemistry
  • Manganese Compounds / chemistry
  • Protein Structure, Tertiary
  • RNA-Dependent RNA Polymerase / chemistry*
  • RNA-Dependent RNA Polymerase / isolation & purification
  • Viral Proteins / chemistry*

Substances

  • Cations, Divalent
  • Chlorides
  • Manganese Compounds
  • Viral Proteins
  • Magnesium Chloride
  • RNA-Dependent RNA Polymerase
  • manganese chloride