Dideoxy linear PCR on a commercial fluorescent automated DNA sequencer

Biotechniques. 1992 Jan;12(1):48-50, 52-3.

Abstract

The use of automated fluorescent DNA sequencer systems and PCR-based DNA sequencing methods play an important role in the actual effort to improve the efficiency of large-scale DNA analysis. Here we show the application of the linear PCR using a single fluorescent primer and dideoxynucleotide terminators in four separate sequencing reactions on the EMBL/Pharmacia's fluorescent automated DNA sequencer. We have used dideoxy/deoxynucleoside triphosphate ratios and linear amplification cycle conditions to obtain an accurate sequencing response of up to, and over, 500 bases from just 400 ng of double-stranded DNA template without chemical denaturation. The sequencing protocol described in this paper is effectively suited for enhancement of sensitivity and performance of the automated DNA sequencing system.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Autoanalysis*
  • Base Sequence
  • DNA / chemistry*
  • Deoxyadenine Nucleotides
  • Deoxycytosine Nucleotides
  • Deoxyguanine Nucleotides
  • Dideoxynucleotides
  • Fluorescent Dyes*
  • Nucleotides
  • Plasmids
  • Polymerase Chain Reaction / methods*
  • Thymine Nucleotides

Substances

  • Deoxyadenine Nucleotides
  • Deoxycytosine Nucleotides
  • Deoxyguanine Nucleotides
  • Dideoxynucleotides
  • Fluorescent Dyes
  • Nucleotides
  • Thymine Nucleotides
  • 2',3'-dideoxyadenosine triphosphate
  • 2',3'-dideoxycytidine 5'-triphosphate
  • 2',3'-dideoxyguanosine 5'-triphosphate
  • DNA
  • 2',3'-dideoxythymidine triphosphate