Spontaneous reverse movement of mRNA-bound tRNA through the ribosome

Nat Struct Mol Biol. 2007 Apr;14(4):318-24. doi: 10.1038/nsmb1221. Epub 2007 Mar 18.

Abstract

During the translocation step of protein synthesis, a complex of two transfer RNAs bound to messenger RNA (tRNA-mRNA) moves through the ribosome. The reaction is promoted by an elongation factor, called EF-G in bacteria, which, powered by GTP hydrolysis, induces an open, unlocked conformation of the ribosome that allows for spontaneous tRNA-mRNA movement. Here we show that, in the absence of EF-G, there is spontaneous backward movement, or retrotranslocation, of two tRNAs bound to mRNA. Retrotranslocation is driven by the gain in affinity when a cognate E-site tRNA moves into the P site, which compensates the affinity loss accompanying the movement of peptidyl-tRNA from the P to the A site. These results lend support to the diffusion model of tRNA movement during translocation. In the cell, tRNA movement is biased in the forward direction by EF-G, which acts as a Brownian ratchet and prevents backward movement.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cryoelectron Microscopy
  • Escherichia coli / metabolism*
  • Models, Molecular
  • Movement*
  • Protein Biosynthesis
  • RNA, Bacterial / metabolism*
  • RNA, Bacterial / ultrastructure
  • RNA, Messenger / metabolism*
  • RNA, Messenger / ultrastructure
  • RNA, Transfer / metabolism*
  • RNA, Transfer / ultrastructure
  • RNA, Transfer, Amino Acyl / metabolism
  • Ribosomes / metabolism*
  • Ribosomes / ultrastructure

Substances

  • RNA, Bacterial
  • RNA, Messenger
  • RNA, Transfer, Amino Acyl
  • tRNA, peptidyl-
  • RNA, Transfer