Proteomics study reveals cross-talk between Rho guanidine nucleotide dissociation inhibitor 1 post-translational modifications in epidermal growth factor stimulated fibroblasts

J Proteome Res. 2007 Jul;6(7):2623-30. doi: 10.1021/pr070078f. Epub 2007 May 17.

Abstract

Following stimulation of NRK49F rat kidney fibroblast cells with epidermal growth factor, possible preemptive cross-talk between arginine methylation and serine and tyrosine phosphorylation was observed for Rho guanidine nucleotide dissociation inhibitor 1 (RhoGDI-1). Five dimethylation sites (Lys50, Lys52, Arg111, Arg152, Arg180) and two new phosphorylation sites (Tyr144, Ser148) were identified for RhoGDI-1. All presently known phosphorylation sites for RhoGDI-1 lie within the 10 residues immediately prior to the 3 sites for arginine dimethylation, and these dimethylation/phosphorylation modules may constitute functional switches. Consideration of structural data and other literature for RhoGDI-1 suggests that methylation and phosphorylation cooperatively affect formation of complexes with different Rho/Rac family proteins and that methylation may be crucial in partitioning of RhoGDI-1 between different functional roles. On the basis of results presented here, it can be implied that unidentified arginine methyltransferases may exist and that arginine methylation may have a greater role in cellular signaling processes than is currently recognized. The combined use of SILAC labeling of arginine (SILAC = stable isotope labeling by amino acids in cell culture), immobilized metal affinity chromatography based phosphoprotein enrichment, and mass spectrometry is clearly a useful method for this investigation.

MeSH terms

  • Amino Acid Sequence
  • Amino Acids / chemistry
  • Amino Acids / metabolism
  • Animals
  • Arginine / chemistry
  • Arginine / metabolism
  • Cell Line
  • Chromatography, Affinity
  • Epidermal Growth Factor / pharmacology*
  • Fibroblasts / drug effects*
  • Fibroblasts / metabolism
  • Guanine Nucleotide Dissociation Inhibitors / chemistry
  • Guanine Nucleotide Dissociation Inhibitors / genetics
  • Guanine Nucleotide Dissociation Inhibitors / metabolism*
  • Isotope Labeling / methods
  • Methylation
  • Molecular Sequence Data
  • Phosphopeptides / analysis
  • Phosphoproteins / analysis
  • Phosphorylation
  • Protein Conformation
  • Protein Processing, Post-Translational*
  • Proteomics*
  • Rats
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • cdc42 GTP-Binding Protein / metabolism
  • rho-Specific Guanine Nucleotide Dissociation Inhibitors

Substances

  • Amino Acids
  • Guanine Nucleotide Dissociation Inhibitors
  • Phosphopeptides
  • Phosphoproteins
  • rho-Specific Guanine Nucleotide Dissociation Inhibitors
  • Epidermal Growth Factor
  • Arginine
  • cdc42 GTP-Binding Protein