Crystallization and preliminary X-ray analysis of the mRNA-binding domain of elongation factor SelB from Escherichia coli in complex with RNA

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1;63(Pt 5):419-21. doi: 10.1107/S174430910701723X. Epub 2007 Apr 20.

Abstract

In bacteria, selenocysteine (the 21st amino acid) is incorporated into proteins via machinery that includes SelB, a specific translational elongation factor. SelB binds to an mRNA hairpin called the selenocysteine-insertion sequence (SECIS) and delivers selenocysteyl-tRNA(Sec) to the ribosomal A site. The minimum C-terminal fragment (residues 478-614) of Escherichia coli SelB (SelB-WH3/4) required for SECIS binding has been overexpressed and purified. This protein was crystallized in complex with 23 nucleotides of the SECIS hairpin at 294 K using the hanging-drop vapour-diffusion method. A data set was collected to 2.3 A resolution from a single crystal at 100 K using ESRF beamline BM-30. The crystal belongs to space group C2, with unit-cell parameters a = 103.50, b = 56.51, c = 48.41 A. The asymmetric unit contains one WH3/4-domain-RNA complex. The Matthews coefficient was calculated to be 3.37 A3 Da(-1) and the solvent content was estimated to be 67.4%.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Base Sequence
  • Binding Sites
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray
  • DNA Primers
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Protein Conformation
  • RNA, Messenger / metabolism*

Substances

  • Bacterial Proteins
  • DNA Primers
  • Escherichia coli Proteins
  • RNA, Messenger
  • SelB protein, Bacteria