Recent duplication and positive selection of the GAGE gene family

Genetica. 2008 May;133(1):31-5. doi: 10.1007/s10709-007-9179-9. Epub 2007 Jul 29.

Abstract

We report that the GAGE gene family of human Cancer/testis antigen (CTA) genes is likely to be in an early stage of its evolution. Members of this gene family are tandemly arranged on the X chromosome only in human, chimpanzee and macaque genomes and share a very high similarity. Phylogenetic trees show that the GAGE gene family began to duplicate after the split of human and chimpanzee. The estimated ages of the duplication events range from 4 million years ago to the present. The Ka/Ks values between the duplicates are significantly greater than 1, indicating that the mutation rate is higher in coding regions than non-coding regions of the genes, which suggests that the GAGE gene family is under positive selection. These findings indicate that the GAGE gene family may be a newly formed gene family undergoing rapid functional evolution.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antigens, Neoplasm / chemistry
  • Antigens, Neoplasm / genetics*
  • Computational Biology
  • Evolution, Molecular*
  • Gametogenesis / genetics
  • Gene Duplication*
  • Humans
  • Molecular Sequence Data
  • Multigene Family / genetics*
  • Pan troglodytes / genetics
  • Phylogeny
  • Selection, Genetic*
  • Sequence Alignment
  • Sequence Homology, Amino Acid

Substances

  • Antigens, Neoplasm