Ligand-transporter interaction in the AcrB multidrug efflux pump determined by fluorescence polarization assay

FEBS Lett. 2007 Oct 16;581(25):4972-6. doi: 10.1016/j.febslet.2007.09.035. Epub 2007 Sep 25.

Abstract

The AcrB of Escherichia coli pumps out a wide range of compounds, including most of the currently available antibiotics, and contributes significantly to the serious problem of multidrug resistance of pathogenic bacteria. Quantitative analysis of drug efflux by this pump requires the measurement of the affinity of ligands. Yet there has been no success in determining these values. We introduce here an approach of steady-state fluorescence polarization to study the interactions between four different ligands and the purified AcrB transporter in a detergent environment. Our assays indicate that the transporter binds these drugs with K(D) values ranging from 5.5 to 74.1microM.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Ciprofloxacin / metabolism
  • Escherichia coli Proteins / metabolism*
  • Ethidium / metabolism
  • Fluorescence Polarization
  • Hydrogen-Ion Concentration
  • Kinetics
  • Ligands
  • Multidrug Resistance-Associated Proteins / metabolism*
  • Proflavine / metabolism

Substances

  • AcrB protein, E coli
  • Escherichia coli Proteins
  • Ligands
  • Multidrug Resistance-Associated Proteins
  • Ciprofloxacin
  • Proflavine
  • Ethidium