The structural dynamics and energetics of an immunodominant T cell receptor are programmed by its Vbeta domain

Immunity. 2008 Feb;28(2):171-82. doi: 10.1016/j.immuni.2007.12.018.

Abstract

Immunodominant and public T cell receptor (TCR) usage is relatively common in many viral diseases yet surprising in the context of the large naive TCR repertoire. We examined the highly conserved Vbeta17:Valpha10.2 JM22 T cell response to the influenza matrix peptide (58-66)-HLA-A*0201 (HLA-A2-flu) through extensive kinetic, thermodynamic, and structural analyses. We found several conformational adjustments that accompany JM22-HLA-A2-flu binding and identified a binding "hotspot" within the Vbeta domain of the TCR. Within this hotspot, key germline-encoded CDR1 and CDR2 loop residues and a crucial but commonly coded residue in the hypervariable region of CDR3 provide the basis for the substantial bias in the selection of the germline-encoded Vbeta17 domain. The chances of having a substantial number of T cells in the naive repertoire that have HLA-A2-flu-specific Vbeta17 receptors may consequently be relatively high, thus explaining the immunodominant usage of this clonotype.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Animals
  • Crystallography, X-Ray
  • HLA-A Antigens / chemistry
  • HLA-A Antigens / immunology*
  • HLA-A Antigens / metabolism
  • HLA-A2 Antigen
  • Humans
  • Immunodominant Epitopes / immunology*
  • Influenza A virus / immunology
  • Models, Molecular
  • Mutant Proteins / chemistry
  • Mutant Proteins / metabolism
  • Mutation
  • Protein Structure, Tertiary
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • Receptors, Antigen, T-Cell, alpha-beta / chemistry
  • Receptors, Antigen, T-Cell, alpha-beta / immunology
  • Receptors, Antigen, T-Cell, alpha-beta / metabolism*
  • Structure-Activity Relationship
  • T-Lymphocytes / immunology*
  • T-Lymphocytes / metabolism
  • Viral Matrix Proteins / immunology*

Substances

  • HLA-A Antigens
  • HLA-A*02:01 antigen
  • HLA-A2 Antigen
  • Immunodominant Epitopes
  • Mutant Proteins
  • Protein Subunits
  • Receptors, Antigen, T-Cell, alpha-beta
  • Viral Matrix Proteins

Associated data

  • PDB/2VLJ
  • PDB/2VLK
  • PDB/2VLL
  • PDB/2VLM
  • PDB/2VLR