A relational database for sequence-specific protein NMR data

B R Seavey; E A Farr; W M Westler; J L Markley

doi:10.1007/BF01875516

A relational database for sequence-specific protein NMR data

J Biomol NMR. 1991 Sep;1(3):217-36. doi: 10.1007/BF01875516.

Authors

B R Seavey¹, E A Farr, W M Westler, J L Markley

Affiliation

¹ Biochemistry Department, College of Agricultural and Life Sciences, University of Wisconsin-Madison 53706-1569.

PMID: 1841696
DOI: 10.1007/BF01875516

Abstract

A protein NMR database has been designed and is being implemented. The database is intended to contain solution NMR results from proteins and peptides (larger than 12 residues). A relational database format has been chosen that indexes data by: primary journal citation, molecular species, sequence-related and atom-specific assignments, and experimental conditions. At present, all data are entered from the primary refereed literature. Examples are given of sample queries to the database. Possible distribution formats are discussed.

Publication types

Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, P.H.S.

MeSH terms

Animals
Databases, Bibliographic*
Magnetic Resonance Spectroscopy / methods*
Peptides / chemistry*
Protein Conformation*
Proteins / chemistry*

Substances

Peptides
Proteins

Abstract

Publication types

MeSH terms

Substances

Grants and funding