The 2'-hydroxyl group of the guanosine nucleophile donates a functionally important hydrogen bond in the tetrahymena ribozyme reaction

Biochemistry. 2008 Jul 22;47(29):7684-94. doi: 10.1021/bi8000648. Epub 2008 Jun 24.

Abstract

In the first step of self-splicing, group I introns utilize an exogenous guanosine nucleophile to attack the 5'-splice site. Removal of the 2'-hydroxyl of this guanosine results in a 10 (6)-fold loss in activity, indicating that this functional group plays a critical role in catalysis. Biochemical and structural data have shown that this hydroxyl group provides a ligand for one of the catalytic metal ions at the active site. However, whether this hydroxyl group also engages in hydrogen-bonding interactions remains unclear, as attempts to elaborate its function further usually disrupt the interactions with the catalytic metal ion. To address the possibility that this 2'-hydroxyl contributes to catalysis by donating a hydrogen bond, we have used an atomic mutation cycle to probe the functional importance of the guanosine 2'-hydroxyl hydrogen atom. This analysis indicates that, beyond its role as a ligand for a catalytic metal ion, the guanosine 2'-hydroxyl group donates a hydrogen bond in both the ground state and the transition state, thereby contributing to cofactor recognition and catalysis by the intron. Our findings continue an emerging theme in group I intron catalysis: the oxygen atoms at the reaction center form multidentate interactions that function as a cooperative network. The ability to delineate such networks represents a key step in dissecting the complex relationship between RNA structure and catalysis.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chromatography, High Pressure Liquid
  • Guanosine / chemistry
  • Guanosine / metabolism*
  • Hydrogen Bonding
  • Introns
  • Molecular Structure
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / metabolism*
  • Tetrahymena / enzymology*

Substances

  • RNA, Catalytic
  • Guanosine