A Janus-Wedge DNA triplex with A-W1-T and G-W2-C base triplets

J Am Chem Soc. 2008 Oct 8;130(40):13190-1. doi: 10.1021/ja804607v. Epub 2008 Sep 11.

Abstract

A new type of double-stranded DNA targeting format by formation of a Janus-Wedge (J-W) triple helix is described. The "wedge" residue W1 is used for A-T and T-A base pairs while W2 is used for G-C and C-G base pairs. Both wedge residues are attached to a PNA backbone that is designed to insert the probe strand into double-stranded DNA and base pair with both Watson-Crick faces. To study the stability of such an assembly, we have examined the formation of the J-W triplex with various sequences.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • DNA / chemistry*
  • Nucleic Acid Conformation*
  • Nucleic Acid Denaturation
  • Temperature

Substances

  • triplex DNA
  • DNA