The fumarate/succinate antiporter DcuB of Escherichia coli is a bifunctional protein with sites for regulation of DcuS-dependent gene expression

J Biol Chem. 2009 Jan 2;284(1):265-275. doi: 10.1074/jbc.M807856200. Epub 2008 Oct 28.

Abstract

DcuB of Escherichia coli catalyzes C4-dicarboxylate/succinate antiport during growth by fumarate respiration. The expression of genes of fumarate respiration, including the genes for DcuB (dcuB) and fumarate reductase (frdABCD) is transcriptionally activated by C4-dicarboxylates via the DcuS-DcuR two-component system, comprising the sensor kinase DcuS, which contains a periplasmic sensing domain for C4-dicarboxylates. Deletion or inactivation of dcuB caused constitutive expression of DcuS-regulated genes in the absence of C4-dicarboxylates. The effect was specific for DcuB and not observed after inactivation of the homologous DcuA or the more distantly related DcuC transporter. Random and site-directed mutation identified three point mutations (T394I, D398N, and K353A) in DcuB that caused a similar derepression as dcuB deletion, whereas the transport activity of the DcuB mutants was retained. Constitutive expression in the dcuB mutants depended on the presence of a functional DcuS-DcuR two-component system. Mutation of residues E79A, R83A, and R127A of DcuB, on the other hand, inactivated growth by fumarate respiration and transport of [14C]succinate, whereas the expression of dcuB'-'lacZ was not affected. Therefore, the antiporter DcuB is a bifunctional protein and has a regulatory function that is independent from transport, and sites for transport and regulation can be differentiated.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Antiporters / genetics*
  • Antiporters / metabolism
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Dicarboxylic Acid Transporters / genetics
  • Dicarboxylic Acid Transporters / metabolism*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Fumarates / metabolism
  • Gene Expression Regulation, Bacterial / physiology*
  • Gene Knockdown Techniques
  • Ion Transport / physiology
  • Mutagenesis, Site-Directed
  • Peptide Mapping*
  • Protein Kinases / genetics
  • Protein Kinases / metabolism*
  • Succinate Dehydrogenase / genetics
  • Succinate Dehydrogenase / metabolism
  • Succinates / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Antiporters
  • DNA-Binding Proteins
  • DcuR protein, E coli
  • Dicarboxylic Acid Transporters
  • Escherichia coli Proteins
  • Fumarates
  • Succinates
  • Transcription Factors
  • dcuB protein, E coli
  • fumarate reductase complex
  • Succinate Dehydrogenase
  • Protein Kinases
  • DcuS protein, E coli