Physical and functional interactions between human mitochondrial single-stranded DNA-binding protein and tumour suppressor p53

Nucleic Acids Res. 2009 Feb;37(2):568-81. doi: 10.1093/nar/gkn974. Epub 2008 Dec 9.

Abstract

Single-stranded DNA-binding proteins (SSB) form a class of proteins that bind preferentially single-stranded DNA with high affinity. They are involved in DNA metabolism in all organisms and serve a vital role in replication, recombination and repair of DNA. In this report, we identify human mitochondrial SSB (HmtSSB) as a novel protein-binding partner of tumour suppressor p53, in mitochondria. It binds to the transactivation domain (residues 1-61) of p53 via an extended binding interface, with dissociation constant of 12.7 (+/- 0.7) microM. Unlike most binding partners reported to date, HmtSSB interacts with both TAD1 (residues 1-40) and TAD2 (residues 41-61) subdomains of p53. HmtSSB enhances intrinsic 3'-5' exonuclease activity of p53, particularly in hydrolysing 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-oxodG) present at 3'-end of DNA. Taken together, our data suggest that p53 is involved in DNA repair within mitochondria during oxidative stress. In addition, we characterize HmtSSB binding to ssDNA and p53 N-terminal domain using various biophysical measurements and we propose binding models for both.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 8-Hydroxy-2'-Deoxyguanosine
  • Binding Sites
  • Cell Line, Tumor
  • DNA Polymerase gamma
  • DNA, Single-Stranded / metabolism*
  • DNA-Binding Proteins / metabolism*
  • DNA-Directed DNA Polymerase / metabolism
  • Deoxyguanosine / analogs & derivatives
  • Deoxyguanosine / metabolism
  • Exodeoxyribonucleases / metabolism
  • Humans
  • Mitochondrial Proteins / metabolism*
  • Protein Binding
  • Protein Stability
  • Protein Structure, Tertiary
  • Temperature
  • Tumor Suppressor Protein p53 / chemistry
  • Tumor Suppressor Protein p53 / metabolism*

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Mitochondrial Proteins
  • Tumor Suppressor Protein p53
  • 8-Hydroxy-2'-Deoxyguanosine
  • DNA Polymerase gamma
  • DNA-Directed DNA Polymerase
  • Exodeoxyribonucleases
  • Deoxyguanosine