Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex

Mol Cell. 2008 Dec 26;32(6):791-802. doi: 10.1016/j.molcel.2008.10.028.

Abstract

Protein S10 is a component of the 30S ribosomal subunit and participates together with NusB protein in processive transcription antitermination. The molecular mechanisms by which S10 can act as a translation or a transcription factor are not understood. We used complementation assays and recombineering to delineate regions of S10 dispensable for antitermination, and determined the crystal structure of a transcriptionally active NusB-S10 complex. In this complex, S10 adopts the same fold as in the 30S subunit and is blocked from simultaneous association with the ribosome. Mass spectrometric mapping of UV-induced crosslinks revealed that the NusB-S10 complex presents an intermolecular, composite, and contiguous binding surface for RNAs containing BoxA antitermination signals. Furthermore, S10 overproduction complemented a nusB null phenotype. These data demonstrate that S10 and NusB together form a BoxA-binding module, that NusB facilitates entry of S10 into the transcription machinery, and that S10 represents a central hub in processive antitermination.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Crystallography, X-Ray
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / metabolism*
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation / genetics
  • Phenotype
  • Protein Binding
  • Protein Multimerization
  • Protein Structure, Secondary
  • RNA, Bacterial / metabolism
  • Ribosomal Proteins / chemistry*
  • Ribosomal Proteins / metabolism*
  • Ribosomes / metabolism
  • Structure-Activity Relationship
  • Surface Properties
  • Terminator Regions, Genetic*
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism*
  • Transcription, Genetic*

Substances

  • Escherichia coli Proteins
  • NusB protein, E coli
  • RNA, Bacterial
  • Ribosomal Proteins
  • Transcription Factors
  • ribosomal protein S10

Associated data

  • PDB/3D3B
  • PDB/3D3C