RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family

EMBO Rep. 2009 Jun;10(6):649-54. doi: 10.1038/embor.2009.31. Epub 2009 Apr 3.

Abstract

Recent studies have identified a conserved WG/GW-containing motif, known as the Argonaute (AGO) hook, which is involved in the recruitment of AGOs to distinct components of the eukaryotic RNA silencing pathways. By using this motif as a model to detect new components in plant RNA silencing pathways, we identified SPT5-like, a plant-specific AGO4-interacting member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs. Knockout SPT5-like mutants show a decrease in the accumulation of several 24-nt RNAs and hypomethylation at different loci revealing an implication in RNA-directed DNA methylation (RdDM). Here, we propose that SPT5-like emerged in plants as a facultative RNAP elongation factor. Its plant-specific origin and role in RdDM might reflect functional interactions with plant-specific RNA Pols required for RdDM.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Arabidopsis / metabolism*
  • Arabidopsis Proteins / chemistry
  • Arabidopsis Proteins / metabolism*
  • Argonaute Proteins
  • Base Sequence
  • Chromosomal Proteins, Non-Histone / chemistry
  • Chromosomal Proteins, Non-Histone / metabolism*
  • DNA Methylation*
  • Models, Biological
  • Molecular Sequence Data
  • Mutation / genetics
  • Protein Binding
  • RNA, Plant / metabolism*
  • RNA, Small Interfering / metabolism
  • Transcriptional Elongation Factors / chemistry
  • Transcriptional Elongation Factors / metabolism*

Substances

  • AGO4 protein, Arabidopsis
  • Arabidopsis Proteins
  • Argonaute Proteins
  • Chromosomal Proteins, Non-Histone
  • RNA, Plant
  • RNA, Small Interfering
  • Transcriptional Elongation Factors
  • SPT5 transcriptional elongation factor