Abstract
In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5'-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbations. In addition, data regarding chromatin status derived from ChIP-chip to elucidate the transcriptional regulatory interactions are included. Here we present these data to the research community as an integrated web resource.
Publication types
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Research Support, Non-U.S. Gov't
MeSH terms
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Animals
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Chromatin / metabolism
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Chromatin Immunoprecipitation / methods
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Databases, Genetic*
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Gene Expression Profiling
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Gene Expression Regulation*
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Humans
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Information Storage and Retrieval / methods
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Internet*
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MicroRNAs / genetics
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Oligonucleotide Array Sequence Analysis / methods
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RNA, Messenger / genetics
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RNA, Small Interfering / genetics
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Reverse Transcriptase Polymerase Chain Reaction
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Transcription Factors / genetics
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Transcription Factors / metabolism
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Transcription, Genetic / genetics*
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User-Computer Interface
Substances
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Chromatin
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MicroRNAs
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RNA, Messenger
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RNA, Small Interfering
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Transcription Factors