Armored long RNA controls or standards for branched DNA assay for detection of human immunodeficiency virus type 1

J Clin Microbiol. 2009 Aug;47(8):2571-6. doi: 10.1128/JCM.00232-09. Epub 2009 Jun 3.

Abstract

The branched DNA (bDNA) assay is a reliable method for quantifying the RNA of human immunodeficiency virus type 1 (HIV-1). The positive controls and standards for this assay for the detection of HIV-1 consist of naked RNA, which is susceptible to degradation by RNase. Armored RNA is a good candidate for an RNase-resistant positive control or standard. However, its use has been limited by the maximal length of the exogenous RNA packaged into virus-like particles by routine armored RNA technology. In the present study, we produced armored long RNA (armored L-RNA) controls or standards (AR-HIV-pol-3034b) for a bDNA assay of HIV-1 by increasing the amount and affinity of the pac sites (the pac site is a specific 19-nucleotide stem-loop region located at the 5' terminus of the MS2 bacteriophage replicase gene) by a one-plasmid double-expression system. AR-HIV-pol-3034b was completely resistant to DNase and RNase, was stable in normal human EDTA-preserved plasma at 4 degrees C for at least 6 months, and produced reproducible, linear results in the Versant HIV-1 RNA 3.0 assay. In conclusion, AR-HIV-pol-3034b could act as a positive control or standard in a bDNA assay for the detection of HIV-1. In addition, the one-plasmid double-expression system can be used as a better platform than the one-plasmid expression system and the two-plasmid coexpression system for expressing armored L-RNA.

MeSH terms

  • Branched DNA Signal Amplification Assay / methods*
  • Branched DNA Signal Amplification Assay / standards*
  • Deoxyribonucleases / metabolism
  • HIV Infections / diagnosis*
  • HIV-1 / genetics
  • HIV-1 / isolation & purification*
  • Humans
  • Levivirus / genetics
  • Plasmids
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • RNA, Viral / isolation & purification*
  • RNA, Viral / metabolism
  • Reference Standards*
  • Ribonucleases / metabolism
  • Transcription, Genetic

Substances

  • RNA, Viral
  • Deoxyribonucleases
  • Ribonucleases