Bowmanella pacifica sp. nov., isolated from a pyrene-degrading consortium

Int J Syst Evol Microbiol. 2009 Jul;59(Pt 7):1579-82. doi: 10.1099/ijs.0.001826-0. Epub 2009 Jun 15.

Abstract

A taxonomic study was carried out on a strain, designated W3-3A(T), which was isolated from a pyrene-degrading consortium, enriched from sediment of the Pacific Ocean. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain W3-3A(T) belonged to the genus Bowmanella, with the highest sequence similarity (99.0 %) with Bowmanella denitrificans BD1(T), whereas sequence similarities with other species were less than 93 %. The nucleotide sequence similarity of both gyrB and rpoD genes of strain W3-3A(T) and B. denitrificans BD1(T) was 81.1 %. However, the protein sequence similarities of the gyrB and rpoD genes of strain W3-3A(T) and B. denitrificans BD1(T) were 96.1 % and 91.0 %, respectively. Phylogenetic trees based on these housekeeping genes showed that strain W3-3A(T) and B. denitrificans BD1(T) formed a distinct lineage in the Gammaproteobacteria. The DNA-DNA hybridization value between strain W3-3A(T) and B. denitrificans BD1(T) was 43 %. Strain W3-3A(T) could also be differentiated from B. denitrificans BD1(T) based on the repetitive extragenic palindromic DNA-PCR fingerprint. The G+C content of the chromosomal DNA of strain W3-3A(T) was 49 mol%. The combined genotypic and phenotypic data showed that strain W3-3A(T) represents a novel species of the genus Bowmanella, for which the name Bowmanella pacifica sp. nov. is proposed, with the type strain W3-3A(T) (=CGMCC 1.7086(T)=LMG 24568(T)=MCCC 1A01018(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alteromonadaceae / classification*
  • Alteromonadaceae / genetics
  • Alteromonadaceae / isolation & purification
  • Alteromonadaceae / physiology
  • Bacterial Typing Techniques
  • Base Composition
  • Biodegradation, Environmental
  • DNA Gyrase / genetics
  • DNA, Bacterial / analysis
  • DNA-Directed RNA Polymerases / genetics
  • Genes, rRNA
  • Genotype
  • Geologic Sediments / microbiology*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Pacific Ocean
  • Phenotype
  • Phylogeny
  • Pyrenes / metabolism*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sigma Factor / genetics
  • Species Specificity

Substances

  • DNA, Bacterial
  • Pyrenes
  • RNA, Ribosomal, 16S
  • Sigma Factor
  • pyrene
  • RNA polymerase sigma 70
  • DNA-Directed RNA Polymerases
  • DNA Gyrase

Associated data

  • GENBANK/EU440951
  • GENBANK/EU441037
  • GENBANK/EU441038
  • GENBANK/EU441039
  • GENBANK/EU441040