Radiation-induced XRCC4 association with chromatin DNA analyzed by biochemical fractionation

J Radiat Res. 2010;51(3):303-13. doi: 10.1269/jrr.09146. Epub 2010 Apr 24.

Abstract

XRCC4, in association with DNA ligase IV, is thought to play a critical role in the ligation of two DNA ends in DNA double-strand break (DSB) repair through non-homologous end-joining (NHEJ) pathway. In the present study, we captured radiation-induced chromatin-recruitment of XRCC4 by biochemical fractionation using detergent Nonidet P-40. A subpopulation of XRCC4 changed into a form that is resistant to the extraction with 0.5% Nonidet P-40-containing buffer after irradiation. This form of XRCC4 was liberated by micrococcal nuclease treatment, indicating that it had been tethered to chromatin DNA. This chromatin-recruitment of XRCC4 could be seen immediately (< 0.1 hr) after irradiation and remained up to 4 hr after 20 Gy irradiation. It was seen even after irradiation of small doses, i.e., 2 Gy, but the residence of XRCC4 on chromatin was very transient after 2 Gy irradiation, returning to near normal level in 0.2-0.5 hr after irradiation. The chromatin-bound XRCC4 represented only approximately 1% of total XRCC4 molecules even after 20 Gy irradiation and the quantitative analysis using purified protein as the reference suggested that only a few XRCC4-DNA ligase IV complexes were recruited to each DNA end. We further show that the chromatin-recruitment of XRCC4 was not attenuated by wortmannin, an inhibitor of DNA-PK, or siRNA-mediated knockdown of the DNA-PK catalytic subunit (DNA-PKcs), indicating that this process does not require DNA-PKcs. These results would provide us with useful experimental tools and important insights to understand the DNA repair process through NHEJ pathway.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Androstadienes / pharmacology
  • Animals
  • Catalytic Domain
  • Cell Line, Tumor
  • Cell Proliferation
  • Chromatin / chemistry
  • Chromatin / genetics*
  • Chromatin / metabolism
  • DNA / genetics*
  • DNA / metabolism
  • DNA-Activated Protein Kinase / metabolism
  • DNA-Binding Proteins / metabolism*
  • Dose Fractionation, Radiation*
  • Dose-Response Relationship, Radiation
  • Mice
  • Micrococcal Nuclease / metabolism
  • RNA, Small Interfering / metabolism
  • Wortmannin
  • X-Rays

Substances

  • Androstadienes
  • Chromatin
  • DNA-Binding Proteins
  • RNA, Small Interfering
  • XRCC4 protein, human
  • DNA
  • DNA-Activated Protein Kinase
  • Micrococcal Nuclease
  • Wortmannin