Few constraints limit the design of quinone methide-oligonucleotide self-adducts for directing DNA alkylation

Chem Commun (Camb). 2011 Feb 7;47(5):1476-8. doi: 10.1039/c0cc03317k. Epub 2010 Nov 18.

Abstract

Nucleotide sequences minimally containing adenosine, cytosine or guanosine are sufficient to form intrastrand oligonucleotide quinone methide self-adducts reversibly for subsequent alkylation of complementary DNA. The general lack of sequence restrictions should now allow for alkylation of most any target of interest although reaction is most efficient when the self-adducts contain guanine residues and do not form hairpin structures.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Alkylation
  • Base Sequence
  • DNA / chemistry*
  • DNA Adducts / chemistry*
  • Indolequinones / chemistry*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligodeoxyribonucleotides / chemistry*

Substances

  • DNA Adducts
  • Indolequinones
  • Oligodeoxyribonucleotides
  • quinone methide
  • DNA