Probing protein structure and dynamics with resonance Raman spectroscopy: cytochrome c peroxidase and hemoglobin

Biochemistry. 1990 May 15;29(19):4497-508. doi: 10.1021/bi00471a001.

Abstract

Because vibrational frequencies are sensitive to structure, RR spectroscopy can provide structural information about kinetic steps in protein transformations when carried out in a time-resolved mode. UVRR spectroscopy has shown that the aromatic groups of the HbCO photoproduct respond with a delay of 20 microseconds and has provided direct structural evidence that the 20-microseconds kinetic step is the R-T quaternary re-arrangement of the subunits. RR bands of the porphyrin ring show that the core relaxes via a 0.1-microsecond protein motion, which probably allows the Fe atom to attain its full out-of plane displacement. The Fe-His stretching frequency has an elevated value immediately after CO photolysis, in part, perhaps, because of the protein constraint on the Fe displacement. It relaxes on both the 0.1- and 1-microsecond time scales to its value in R-state Hb and then decreases further to its T-state value. These changes may be connected with reorientation of the proximal His side chain. At very early times after a photolysis pulse, heating effects may be an important aspect of the protein dynamics, but further experiments are needed to understand the RR response.

Publication types

  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • Allosteric Site
  • Cytochrome-c Peroxidase*
  • Hemoglobins*
  • Hydrogen Bonding
  • Molecular Structure
  • Peroxidases*
  • Protein Conformation
  • Spectrum Analysis, Raman

Substances

  • Hemoglobins
  • Peroxidases
  • Cytochrome-c Peroxidase