RNA sequencing reveals two major classes of gene expression levels in metazoan cells

Mol Syst Biol. 2011 Jun 7:7:497. doi: 10.1038/msb.2011.28.

Abstract

The expression level of a gene is often used as a proxy for determining whether the protein or RNA product is functional in a cell or tissue. Therefore, it is of fundamental importance to understand the global distribution of gene expression levels, and to be able to interpret it mechanistically and functionally. Here we use RNA sequencing (RNA-seq) of mouse Th2 cells, coupled with a range of other techniques, to show that all genes can be separated, based on their expression abundance, into two distinct groups: one group comprised of lowly expressed and putatively non-functional mRNAs, and the other of highly expressed mRNAs with active chromatin marks at their promoters. These observations are confirmed in many other microarray and RNA-seq data sets of metazoan cell types.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Cells, Cultured
  • Computational Biology
  • Gene Expression Profiling / methods*
  • Gene Expression Regulation*
  • In Situ Hybridization, Fluorescence
  • Mice
  • Mice, Inbred C57BL
  • Microarray Analysis
  • RNA, Messenger / genetics
  • Sequence Analysis, RNA / methods*
  • Th2 Cells

Substances

  • RNA, Messenger