Directed evolution of mammalian anti-apoptosis proteins by somatic hypermutation

Protein Eng Des Sel. 2012 Jan;25(1):27-38. doi: 10.1093/protein/gzr052. Epub 2011 Dec 9.

Abstract

Recently, researchers have created novel fluorescent proteins by harnessing the somatic hypermutation ability of B cells. In this study, we examined if this approach could be used to evolve a non-fluorescent protein, namely the anti-apoptosis protein Bcl-x(L), using the Ramos B-cell line. After demonstrating that Ramos cells were capable of mutating a heterologous bcl-x(L) transgene, the cells were exposed to multiple rounds of the chemical apoptosis inducer staurosporine followed by rounds of recovery in fresh medium. The engineered B cells expressing Bcl-x(L) exhibited progressively lower increases in apoptosis activation as measured by caspase-3 activity after successive rounds of selective pressure with staurosporine treatment. Within the B-cell genome, a number of mutated bcl-x(L) transgene variants were identified after three rounds of evolution, including a mutation of Bcl-x(L) Asp29 to either Asn or His, in 8 out of 23 evaluated constructs that represented at least five distinct Ramos subpopulations. Subsequently, Chinese hamster ovary (CHO) cells engineered to overexpress the Bcl-x(L) Asp29Asn variant showed enhanced apoptosis resistance against an orthogonal apoptosis insult, Sindbis virus infection, when compared with cells expressing the wild-type Bcl-x(L) protein. These findings provide, to our knowledge, the first demonstration of evolution of a recombinant mammalian protein in a mammalian expression system.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Apoptosis / drug effects
  • Apoptosis / genetics
  • Apoptosis Regulatory Proteins / genetics*
  • Apoptosis Regulatory Proteins / metabolism
  • B-Lymphocytes / drug effects
  • B-Lymphocytes / metabolism
  • Base Sequence
  • Blotting, Western
  • CHO Cells
  • Caspase 3 / metabolism
  • Cell Line, Tumor
  • Cell Survival / drug effects
  • Cell Survival / genetics
  • Cricetinae
  • Cricetulus
  • Directed Molecular Evolution / methods*
  • Enzyme Inhibitors / pharmacology
  • Humans
  • Luminescent Proteins / genetics
  • Luminescent Proteins / metabolism
  • Mammals / metabolism
  • Mammals / virology
  • Molecular Sequence Data
  • Mutant Proteins / genetics
  • Mutant Proteins / metabolism
  • Mutation*
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Sindbis Virus / physiology
  • Staurosporine / pharmacology
  • bcl-X Protein / genetics*
  • bcl-X Protein / metabolism

Substances

  • Apoptosis Regulatory Proteins
  • Enzyme Inhibitors
  • Luminescent Proteins
  • Mutant Proteins
  • Recombinant Fusion Proteins
  • bcl-X Protein
  • Caspase 3
  • Staurosporine