Segmental maternal uniparental disomy 7q associated with DLK1/GTL2 (14q32) hypomethylation

Am J Med Genet A. 2012 Feb;158A(2):423-8. doi: 10.1002/ajmg.a.34412. Epub 2012 Jan 13.

Abstract

Aberrant methylation at different imprinted loci has been reported for several congenital imprinting disorders, that is, Silver-Russell syndrome (SRS), but the coincidental occurrence of aberrant methylation and uniparental disomy (UPD) has not yet been described. We report on a patient initially diagnosed with SRS carrying a segmental maternal UPD of chromosome 7 [upd(7q)mat]. By further screening the patient's DNA for methylation defects on other chromosomes we identified a hypomethylation of the paternally methylated DLK1/GTL2 locus in 14q32, an epigenotype typically associated with the upd(14)mat phenotype. Detailed clinical analysis confirmed the molecular finding in the patient indicating that the 14q32 epimutation was clinically preponderant. The parallel occurrence of upd(7q)mat and a DLK1/GTL2 hypomethylation in the same patient is a unique finding. Indeed, both disturbances might have occurred coincidentally, but it can also be hypothesized that the upd(7q)mat as the initial genomic mutation represents a trans-acting mutation causing an aberrant methylation in 14q32.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Calcium-Binding Proteins
  • Child, Preschool
  • Chromosomes, Human, Pair 14
  • Chromosomes, Human, Pair 7
  • DNA Methylation / genetics*
  • Humans
  • Intercellular Signaling Peptides and Proteins / genetics
  • Intercellular Signaling Peptides and Proteins / metabolism
  • Male
  • Membrane Proteins / genetics
  • Membrane Proteins / metabolism
  • Proteins / genetics
  • Proteins / metabolism
  • RNA, Long Noncoding
  • Silver-Russell Syndrome / diagnosis
  • Silver-Russell Syndrome / genetics*
  • Silver-Russell Syndrome / pathology*
  • Uniparental Disomy / diagnosis*
  • Uniparental Disomy / genetics*

Substances

  • Calcium-Binding Proteins
  • DLK1 protein, human
  • Intercellular Signaling Peptides and Proteins
  • MEG3 non-coding RNA, human
  • Membrane Proteins
  • Proteins
  • RNA, Long Noncoding