Promiscuous binding of extracellular peptides to cell surface class I MHC protein

Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4580-5. doi: 10.1073/pnas.1201586109. Epub 2012 Mar 7.

Abstract

Algorithms derived from measurements of short-peptide (8-10 mers) binding to class I MHC proteins suggest that the binding groove of a class I MHC protein, such as K(b), can bind well over 1 million different peptides with significant affinity (<500 nM), a level of ligand-binding promiscuity approaching the level of heat shock protein binding of unfolded proteins. MHC proteins can, nevertheless, discriminate between similar peptides and bind many of them with high (nanomolar) affinity. Some insights into this high-promiscuity/high-affinity behavior and its impact on immunodominant peptides in T-cell responses to some infections and vaccination are suggested by results obtained here from testing a model developed to predict the number of cell surface peptide-MHC complexes that form on cells exposed to extracellular (exogenous) peptides.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites
  • Cell Membrane / metabolism
  • Endocytosis
  • Genes, MHC Class I
  • Histocompatibility Antigens Class I / genetics*
  • Humans
  • Inhibitory Concentration 50
  • Kinetics
  • Ligands
  • Mice
  • Models, Biological
  • Ovalbumin / chemistry
  • Peptides / chemistry
  • Protein Binding
  • Protein Denaturation
  • Protein Folding
  • T-Lymphocytes / immunology

Substances

  • Histocompatibility Antigens Class I
  • Ligands
  • Peptides
  • Ovalbumin