Exon trapping: a genetic screen to identify candidate transcribed sequences in cloned mammalian genomic DNA

Proc Natl Acad Sci U S A. 1990 Nov;87(22):8995-9. doi: 10.1073/pnas.87.22.8995.

Abstract

Identification and recovery of transcribed sequences from cloned mammalian genomic DNA remains an important problem in isolating genes on the basis of their chromosomal location. We have developed a strategy that facilitates the recovery of exons from random pieces of cloned genomic DNA. The basis of this "exon trapping" strategy is that, during a retroviral life cycle, genomic sequences of nonviral origin are correctly spliced and may be recovered as a cDNA copy of the introduced segment. By using this genetic assay for cis-acting sequences required for RNA splicing, we have screened approximately 20 kilobase pairs of cloned genomic DNA and have recovered all four predicted exons.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Cell Line
  • Cloning, Molecular / methods*
  • Exons*
  • Genetic Vectors
  • Genomic Library*
  • HLA Antigens / genetics
  • Humans
  • Molecular Sequence Data
  • RNA Splicing

Substances

  • HLA Antigens