Single amino acid exchange in bacteriophage HK620 tailspike protein results in thousand-fold increase of its oligosaccharide affinity

Glycobiology. 2013 Jan;23(1):59-68. doi: 10.1093/glycob/cws126. Epub 2012 Aug 24.

Abstract

Bacteriophage HK620 recognizes and cleaves the O-antigen polysaccharide of Escherichia coli serogroup O18A1 with its tailspike protein (TSP). HK620TSP binds hexasaccharide fragments with low affinity, but single amino acid exchanges generated a set of high-affinity mutants with submicromolar dissociation constants. Isothermal titration calorimetry showed that only small amounts of heat were released upon complex formation via a large number of direct and solvent-mediated hydrogen bonds between carbohydrate and protein. At room temperature, association was both enthalpy- and entropy-driven emphasizing major solvent rearrangements upon complex formation. Crystal structure analysis showed identical protein and sugar conformers in the TSP complexes regardless of their hexasaccharide affinity. Only in one case, a TSP mutant bound a different hexasaccharide conformer. The extended sugar binding site could be dissected in two regions: first, a hydrophobic pocket at the reducing end with minor affinity contributions. Access to this site could be blocked by a single aspartate to asparagine exchange without major loss in hexasaccharide affinity. Second, a region where the specific exchange of glutamate for glutamine created a site for an additional water molecule. Side-chain rearrangements upon sugar binding led to desolvation and additional hydrogen bonding which define this region of the binding site as the high-affinity scaffold.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids
  • Asparagine / genetics
  • Asparagine / metabolism
  • Aspartic Acid / genetics
  • Aspartic Acid / metabolism
  • Binding Sites
  • Catalytic Domain
  • Coliphages / metabolism*
  • Crystallography, X-Ray
  • Glycoside Hydrolases
  • Hydrogen Bonding
  • Models, Molecular
  • O Antigens / chemistry
  • O Antigens / metabolism
  • Oligosaccharides / chemistry
  • Oligosaccharides / metabolism*
  • Protein Conformation
  • Surface Properties
  • Thermodynamics
  • Viral Tail Proteins / chemistry*
  • Viral Tail Proteins / genetics
  • Viral Tail Proteins / metabolism

Substances

  • Amino Acids
  • O Antigens
  • Oligosaccharides
  • Viral Tail Proteins
  • Aspartic Acid
  • Asparagine
  • Glycoside Hydrolases
  • tailspike protein, bacteriophage