The complete genome sequence of a Brazilian isolate of yam mild mosaic virus

Arch Virol. 2013 Feb;158(2):515-8. doi: 10.1007/s00705-012-1509-2. Epub 2012 Oct 19.

Abstract

In this study, the complete genome of an isolate of yam mild mosaic virus (YMMV) from Brazil was sequenced, and the predicted amino acid sequence was analyzed. The YMMV RNA genome consists of 9538 nt without the poly(A) tail, encoding a putative typical potyvirus polyprotein of 3084 amino acids. Furthermore, the small overlapping ORF (PIPO) in the P3 gene was also deduced, and the cleavage sites of the polyprotein were predicted. Multiple alignment with other potyviruses showed a maximum nucleotide sequence identity of 64 % to wild tomato mosaic virus. A phylogenetic tree showed that YMMV clustered with Asian potyviruses that mainly infect solanaceous plants.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brazil
  • Cluster Analysis
  • Dioscorea / virology
  • Genome, Viral*
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Plant Diseases / virology
  • Potyvirus / genetics*
  • Potyvirus / isolation & purification
  • RNA, Viral / genetics*
  • Sequence Analysis, DNA*
  • Sequence Homology, Nucleic Acid

Substances

  • RNA, Viral

Associated data

  • GENBANK/JX470965
  • RefSeq/NC_019412