Complete genome sequence of arracacha virus B: a novel cheravirus

Arch Virol. 2013 Apr;158(4):909-13. doi: 10.1007/s00705-012-1546-x. Epub 2012 Nov 29.

Abstract

The complete genome sequences of RNA1 and RNA2 of the oca strain of the potato virus arracacha virus B were determined using next-generation sequencing. The RNA1 molecule is predicted to encode a 259-kDa polyprotein with homology to proteins of the cheraviruses apple latent spherical virus (ALSV) and cherry rasp leaf virus (CRLV). The RNA2 molecule is predicted to encode a 102-kDa polyprotein which also has homology to the corresponding protein of ALSV and, to a lesser degree, CRLV (30 % for RNA1, 24 % for RNA2). Detailed analysis of the genome sequence confirms that AVB is a distinct member of the genus Cheravirus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Gene Expression Regulation, Viral / physiology
  • Genome, Viral*
  • Molecular Sequence Data
  • Phylogeny
  • Plant Viruses / classification
  • Plant Viruses / genetics*
  • Polyproteins / genetics
  • Polyproteins / metabolism
  • RNA Viruses / classification
  • RNA Viruses / genetics*
  • RNA, Viral / genetics
  • RNA, Viral / metabolism
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • Polyproteins
  • RNA, Viral
  • Viral Proteins