Computational modeling of epidermal cell fate determination systems

Curr Opin Plant Biol. 2013 Feb;16(1):5-10. doi: 10.1016/j.pbi.2012.12.003. Epub 2013 Jan 1.

Abstract

Cell fate decisions are of primary importance for plant development. Their simple 'either-or' outcome and dynamic nature has attracted the attention of computational modelers. Recent efforts have focused on modeling the determination of several epidermal cell types in the root and shoot of Arabidopsis where many molecular components have been defined. Results of integrated modeling and molecular biology experimentation in these systems have highlighted the importance of competitive positive and negative factors and interconnected feedback loops in generating flexible yet robust mechanisms for establishing distinct gene expression programs in neighboring cells. These models have proven useful in judging hypotheses and guiding future research.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Arabidopsis / cytology
  • Arabidopsis / genetics
  • Arabidopsis / growth & development*
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism
  • Body Patterning
  • Cell Differentiation
  • Computer Simulation*
  • Feedback
  • Gene Expression Regulation, Developmental*
  • Gene Expression Regulation, Plant
  • Models, Biological
  • Plant Epidermis / cytology
  • Plant Epidermis / genetics
  • Plant Epidermis / growth & development*
  • Plant Roots / cytology
  • Plant Roots / genetics
  • Plant Roots / growth & development
  • Plant Stems / cytology
  • Plant Stems / genetics
  • Plant Stems / growth & development
  • Plant Stomata / cytology
  • Plant Stomata / genetics
  • Plant Stomata / growth & development

Substances

  • Arabidopsis Proteins