Biochemical and mutational analysis of a novel nicotinamidase from Oceanobacillus iheyensis HTE831

PLoS One. 2013;8(2):e56727. doi: 10.1371/journal.pone.0056727. Epub 2013 Feb 25.

Abstract

Nicotinamidases catalyze the hydrolysis of nicotinamide to nicotinic acid and ammonia, an important reaction in the NAD(+) salvage pathway. This paper reports a new nicotinamidase from the deep-sea extremely halotolerant and alkaliphilic Oceanobacillus iheyensis HTE831 (OiNIC). The enzyme was active towards nicotinamide and several analogues, including the prodrug pyrazinamide. The enzyme was more nicotinamidase (kcat/Km = 43.5 mM(-1)s(-1)) than pyrazinamidase (kcat/Km = 3.2 mM(-1)s(-1)). Mutational analysis was carried out on seven critical amino acids, confirming for the first time the importance of Cys133 and Phe68 residues for increasing pyrazinamidase activity 2.9- and 2.5-fold, respectively. In addition, the change in the fourth residue involved in the ion metal binding (Glu65) was detrimental to pyrazinamidase activity, decreasing it 6-fold. This residue was also involved in a new distinct structural motif DAHXXXDXXHPE described in this paper for Firmicutes nicotinamidases. Phylogenetic analysis revealed that OiNIC is the first nicotinamidase described for the order Bacillales.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillaceae / enzymology*
  • Bacillaceae / genetics
  • Niacinamide / metabolism
  • Nicotinamidase / classification
  • Nicotinamidase / genetics
  • Nicotinamidase / metabolism*
  • Phylogeny
  • Pyrazinamide / metabolism
  • Substrate Specificity

Substances

  • Niacinamide
  • Pyrazinamide
  • Nicotinamidase

Grants and funding

This study was partially supported by Spanish grants from MINECO-FEDER (BIO2010-22225-C02-01) and from the Programa de Ayuda a Grupos de Excelencia de la Región de Murcia, Fundación Séneca (04541/GERM/06, Plan Regional de Ciencia y Tecnología 2007–2010). GSC is supported by a predoctoral fellowship from Ministerio de Educación and MIGG is a holder of a predoctoral fellowship associated with the above project from Fundación Séneca. The funding agencies had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.