Small DNA circles as probes of DNA topology

Biochem Soc Trans. 2013 Apr;41(2):565-70. doi: 10.1042/BST20120320.

Abstract

Small DNA circles can occur in Nature, for example as protein-constrained loops, and can be synthesized by a number of methods. Such small circles provide tractable systems for the study of the structure, thermodynamics and molecular dynamics of closed-circular DNA. In the present article, we review the occurrence and synthesis of small DNA circles, and examine their utility in studying the properties of DNA and DNA-protein interactions. In particular, we highlight the analysis of small circles using atomistic simulations.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • DNA, Circular / chemistry*
  • Humans
  • Molecular Dynamics Simulation
  • Molecular Probes / metabolism*
  • Protein Binding
  • Proteins / metabolism

Substances

  • DNA, Circular
  • Molecular Probes
  • Proteins