A comprehensive machine-readable view of the mammalian cholesterol biosynthesis pathway

Biochem Pharmacol. 2013 Jul 1;86(1):56-66. doi: 10.1016/j.bcp.2013.03.021. Epub 2013 Apr 10.

Abstract

Cholesterol biosynthesis serves as a central metabolic hub for numerous biological processes in health and disease. A detailed, integrative single-view description of how the cholesterol pathway is structured and how it interacts with other pathway systems is lacking in the existing literature. Here we provide a systematic review of the existing literature and present a detailed pathway diagram that describes the cholesterol biosynthesis pathway (the mevalonate, the Kandutch-Russell and the Bloch pathway) and shunt pathway that leads to 24(S),25-epoxycholesterol synthesis. The diagram has been produced using the Systems Biology Graphical Notation (SBGN) and is available in the SBGN-ML format, a human readable and machine semantically parsable open community file format.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cholesterol / analogs & derivatives
  • Cholesterol / biosynthesis*
  • Computer Graphics
  • Electronic Data Processing
  • Humans
  • Internet
  • Mammals
  • Metabolic Networks and Pathways*
  • Mevalonic Acid / metabolism
  • Models, Biological
  • Software*
  • Squalene / metabolism
  • Systems Biology

Substances

  • 24,25-epoxycholesterol
  • Squalene
  • Cholesterol
  • Mevalonic Acid