A simple, universal, efficient PCR-based gene synthesis method: sequential OE-PCR gene synthesis

Gene. 2013 Jul 25;524(2):347-54. doi: 10.1016/j.gene.2013.03.126. Epub 2013 Apr 15.

Abstract

Herein we present a simple, universal, efficient gene synthesis method based on sequential overlap extension polymerase chain reactions (OE-PCRs). This method involves four key steps: (i) the design of paired complementary 54-mer oligonucleotides with 18 bp overlaps, (ii) the utilisation of sequential OE-PCR to synthesise full-length genes, (iii) the cloning and sequencing of four positive T-clones of the synthesised genes and (iv) the resynthesis of target genes by OE-PCR with correct templates. Mispriming and secondary structure were found to be the principal obstacles preventing successful gene synthesis and were easily identified and solved in this method. Compensating for the disadvantages of being laborious and time-consuming, this method has many attractive advantages, such as the ability to guarantee successful gene synthesis in most cases and good allowance for Taq polymerase, oligonucleotides, PCR conditions and a high error rate. Thus, this method provides an alternative tool for individual gene synthesis without strict needs of the high-specialised experience.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Chikungunya virus / chemistry
  • Chikungunya virus / genetics
  • DNA, Viral / chemical synthesis*
  • DNA, Viral / chemistry
  • Enterovirus A, Human / chemistry
  • Enterovirus A, Human / genetics
  • Escherichia coli / chemistry
  • Escherichia coli / genetics
  • Genes, Synthetic*
  • Genes, Viral*
  • Genetic Vectors / chemistry
  • Genetic Vectors / genetics
  • Nucleic Acid Conformation
  • Oligonucleotides / chemistry*
  • Polymerase Chain Reaction / methods*
  • Sequence Analysis, DNA
  • Time Factors

Substances

  • DNA, Viral
  • Oligonucleotides