A 4-gene panel as a marker at chromosome 8q in Asian gastric cancer patients

Genomics. 2013 Oct;102(4):323-30. doi: 10.1016/j.ygeno.2013.05.004. Epub 2013 May 28.

Abstract

A widely held viewpoint is that the use of multiple markers, combined in some type of algorithm, will be necessary to provide high enough discrimination between diseased cases and non-diseased. We applied stepwise logistic regression analysis to identify the best combination of the 32 biomarkers at chromosome 8q on an independent public microarray test set of 80 paired gastric samples. A combination of SULF1, INTS8, ATP6V1C1, and GPR172A was identified with a prediction accuracy of 98.0% for discriminating carcinomas from adjacent noncancerous tissues in our previous 25 paired samples. Interestingly, the overexpression of SULF1 was associated with tumor invasion and metastasis. Function prediction analysis revealed that the 4-marker panel was mainly associated with acidification of intracellular compartments. Taken together, we found a 4-gene panel that accurately discriminated gastric carcinomas from adjacent noncancerous tissues and these results had potential clinical significance in the early diagnosis and targeted treatment of gastric cancer.

Keywords: Biomarkers; Gastric cancer; Neoplasm invasion; Regression analysis; SULF1 protein, human.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Asian People / genetics*
  • Biomarkers, Tumor / genetics*
  • Chromosomes, Human, Pair 8 / genetics*
  • Computational Biology
  • Databases, Genetic
  • Extracellular Matrix / genetics
  • Extracellular Matrix Proteins / genetics*
  • Extracellular Matrix Proteins / metabolism
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Microarray Analysis / methods
  • Neoplasm Invasiveness / genetics
  • Receptors, G-Protein-Coupled / genetics*
  • Receptors, G-Protein-Coupled / metabolism
  • Regression Analysis
  • Stomach Neoplasms / diagnosis
  • Stomach Neoplasms / genetics*
  • Stomach Neoplasms / pathology
  • Sulfotransferases / genetics*
  • Sulfotransferases / metabolism
  • Transcriptome
  • Vacuolar Proton-Translocating ATPases / genetics*
  • Vacuolar Proton-Translocating ATPases / metabolism

Substances

  • Biomarkers, Tumor
  • CTHRC1 protein, human
  • Extracellular Matrix Proteins
  • Receptors, G-Protein-Coupled
  • SLC52A2 protein, human
  • SULF1 protein, human
  • Sulfotransferases
  • ATP6V1C1 protein, human
  • Vacuolar Proton-Translocating ATPases