Visualization of poly(ADP-ribose) bound to PARG reveals inherent balance between exo- and endo-glycohydrolase activities

Nat Commun. 2013:4:2164. doi: 10.1038/ncomms3164.

Abstract

Poly-ADP-ribosylation is a post-translational modification that regulates processes involved in genome stability. Breakdown of the poly(ADP-ribose) (PAR) polymer is catalysed by poly(ADP-ribose) glycohydrolase (PARG), whose endo-glycohydrolase activity generates PAR fragments. Here we present the crystal structure of PARG incorporating the PAR substrate. The two terminal ADP-ribose units of the polymeric substrate are bound in exo-mode. Biochemical and modelling studies reveal that PARG acts predominantly as an exo-glycohydrolase. This preference is linked to Phe902 (human numbering), which is responsible for low-affinity binding of the substrate in endo-mode. Our data reveal the mechanism of poly-ADP-ribosylation reversal, with ADP-ribose as the dominant product, and suggest that the release of apoptotic PAR fragments occurs at unusual PAR/PARG ratios.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biocatalysis
  • Conserved Sequence
  • Crystallography, X-Ray
  • Glutamic Acid / metabolism
  • Glycoside Hydrolases / chemistry
  • Glycoside Hydrolases / metabolism*
  • Humans
  • Hydrolysis
  • Models, Molecular
  • Molecular Dynamics Simulation
  • Mutagenesis
  • Poly Adenosine Diphosphate Ribose / chemistry
  • Poly Adenosine Diphosphate Ribose / metabolism*
  • Substrate Specificity
  • Tetrahymena thermophila / enzymology*

Substances

  • Poly Adenosine Diphosphate Ribose
  • Glutamic Acid
  • Glycoside Hydrolases
  • poly ADP-ribose glycohydrolase

Associated data

  • PDB/4L2H