Structure of the inositol-1-phosphate cytidylyltransferase from Thermotoga maritima

Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1808-17. doi: 10.1107/S0907444913015278. Epub 2013 Aug 17.

Abstract

The unique steps in the synthesis of an unusual osmolyte in hyperthermophiles, di-myo-inositol-1,1'-phosphate (DIP), involve the production of CDP-inositol and its condensation with an inositol-1-phosphate molecule to form phosphorylated DIP. While many organisms fuse both activities into a single enzyme, the two are separate in Thermotoga maritima. The crystal structure of the T. maritima inositol-1-phosphate cytidylyltransferase, which as a soluble protein may transiently associate with its membrane-embedded partner phospho-DIP synthase (P-DIPS), has now been obtained. The structure shows a conserved motif of sugar nucleotide transferases (COG1213) with a structurally reinforced C-terminal Cys bonded to the core of the protein. A bound arsenosugar identifies the location of the active site for inositol 1-phosphate. Based on homologous structures from several species and the identification of the crucial conserved aspartate residue, a catalytic mechanism for this enzyme is proposed as well as a mode for its association with P-DIPS. This structure imposes constraints on the mode of association, communication and temperature activation of two separate enzymes in T. maritima. For the first time, a working model for the membrane-bound P-DIPS unit has been constructed. This sheds light on the functioning of the phosphatidylserine and phosphatidylinositol synthases involved in many physiological processes that are homologous to P-DIPS. This work provides fresh insights into the synthesis of the unusual thermoprotective compound DIP in hyperthermophiles.

Keywords: di-myo-inositol phosphate; inositol; inositol-1-phosphate citidylyltransferase.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Choline-Phosphate Cytidylyltransferase / chemistry
  • Crystallography, X-Ray
  • Inositol Phosphates / chemistry*
  • Nucleotidyltransferases / chemistry*
  • Thermotoga maritima / enzymology

Substances

  • Inositol Phosphates
  • di-myo-inositol-1,1'-phosphate
  • inositol 1-phosphate
  • Nucleotidyltransferases
  • Choline-Phosphate Cytidylyltransferase

Associated data

  • PDB/4JD0