Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium

Cancer Discov. 2013 Oct;3(10):1108-12. doi: 10.1158/2159-8290.CD-13-0219.

Abstract

The National Cancer Institute (NCI) Clinical Proteomic Tumor Analysis Consortium is applying the latest generation of proteomic technologies to genomically annotated tumors from The Cancer Genome Atlas (TCGA) program, a joint initiative of the NCI and the National Human Genome Research Institute. By providing a fully integrated accounting of DNA, RNA, and protein abnormalities in individual tumors, these datasets will illuminate the complex relationship between genomic abnormalities and cancer phenotypes, thus producing biologic insights as well as a wave of novel candidate biomarkers and therapeutic targets amenable to verification using targeted mass spectrometry methods.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers, Tumor / analysis
  • Breast Neoplasms / genetics
  • Breast Neoplasms / metabolism
  • Colonic Neoplasms / genetics
  • Colonic Neoplasms / metabolism
  • Computational Biology
  • Female
  • Genome, Human*
  • Genomics
  • Genotype
  • Humans
  • Molecular Sequence Annotation*
  • Mutation
  • National Cancer Institute (U.S.)
  • National Human Genome Research Institute (U.S.)
  • Neoplasms / genetics*
  • Neoplasms / metabolism*
  • Ovarian Neoplasms / genetics
  • Ovarian Neoplasms / metabolism
  • Phenotype
  • Proteomics*
  • United States

Substances

  • Biomarkers, Tumor