Codon optimisation improves the expression of Trichoderma viride sp. endochitinase in Pichia pastoris

Sci Rep. 2013 Oct 24:3:3043. doi: 10.1038/srep03043.

Abstract

The mature cDNA of endochitinase from Trichoderma viride sp. was optimised based on the codon bias of Pichia pastoris GS115 and synthesised by successive PCR; the sequence was then transformed into P. pastoris GS115 via electroporation. The transformant with the fastest growth rate on YPD plates containing 4 mg/mL G418 was screened and identified. This transformant produced 23.09 U/mL of the recombinant endochitinase, a 35% increase compared to the original strain bearing the wild-type endochitinase cDNA. The recombinant endochitinase was sequentially purified by ammonia sulphate precipitation, DE-52 anion-exchange chromatography and Sephadex G-100 size-exclusion chromatography. Thin-layer chromatography indicated that the purified endochitinase could hydrolyse chito-oligomers or colloidal chitin to generate diacetyl-chitobiose (GlcNAc)₂ as the main product. This study demonstrates (1) a means for high expression of Trichoderma viride sp. endochitinase in P. pastoris using codon optimisation and (2) the preparation of chito-oligomers using endochitinase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Chitinases / chemistry
  • Chitinases / genetics*
  • Chitinases / metabolism
  • Chromatography, Thin Layer
  • Codon*
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics
  • Enzyme Activation
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics*
  • Fungal Proteins / metabolism
  • Gene Expression Regulation, Fungal*
  • Gene Order
  • Genetic Vectors / genetics
  • Molecular Sequence Data
  • Pichia / genetics*
  • Pichia / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Trichoderma / genetics*
  • Trichoderma / metabolism

Substances

  • Codon
  • DNA, Complementary
  • Fungal Proteins
  • Recombinant Proteins
  • Chitinases