The thermal stability of luminescence is important for the application of quantum dots (QDs) in light-emitting devices. The temperature-dependent photoluminescence (PL) intensities and decay times of Mn-doped ZnS, ZnSe, and ZnSeS alloyed core-shell QD films were studied in the temperature range from 80 to 500 K by steady-state and time-resolved PL spectroscopy. It was found that the thermal stability of Mn-doped QD emissions was significantly dependent on the shell thickness and the host bandgap, which was higher than that of workhorse CdSe QDs. Nearly no PL quenching took place in Mn:ZnS QDs with a thick ZnS shell, which kept a high PL quantum yield (QY) of ~50% even at 500 K; and the thermally stable PL was also observed in highly luminescent Mn:ZnSe and Mn:ZnSeS QDs with a quenching temperature over 200 °C. Further, the stability of Mn-doped QDs with different shell thickness at high temperature was also examined through heating-cooling cycling experiments. The PL quenching in the thick shell-coated Mn-doped QDs was almost totally recovered. The PL quenching mechanisms of the Mn(2+) ion emissions were discussed.