The present investigation studies the effects of cow and chicken manure and sewage sludge at different rates of addition and with two irrigation waters of different salinities on two major calcareous soils in Bahrain. The aim was to quantify potential improvements in soil quality, the accumulation of trace metals, and quality of leachates.From the pot experiments it was found that soil waterholding capacity did not change significantly after addition of organic amendments, except in the case of sewage sludge. Total organic carbon and total Kjeldhal nitrogen content increased in the 0-5 cm layer. Low salinity water and sewage applications improved aggregate stability. Extractable phosphorus was enhanced by the chicken manure treatment more than others. Addition of different organic amendments did not affect exchangeable cations. pH values did not show appreciable changes and soils were neutral. Trace metals studied were present at non-toxic levels in the 0-5 cm layer. Zinc and copper were the only metal showing a tendency to leach to the lower soil layer. In all cases metal levels in the surface layer were proportional to the quantities added in the amendments and their levels in the leachate were very low.