Chemical genomics for studying parasite gene function and interaction

Trends Parasitol. 2013 Dec;29(12):603-11. doi: 10.1016/j.pt.2013.10.005. Epub 2013 Nov 9.

Abstract

With the development of new technologies in genome sequencing, gene expression profiling, genotyping, and high-throughput screening of chemical compound libraries, small molecules are playing increasingly important roles in studying gene expression regulation, gene-gene interaction, and gene function. Here we briefly review and discuss some recent advancements in drug target identification and phenotype characterization using combinations of high-throughput screening of small-molecule libraries and various genome-wide methods such as whole-genome sequencing, genome-wide association studies (GWAS), and genome-wide expression analysis. These approaches can be used to search for new drugs against parasite infections, to identify drug targets or drug resistance genes, and to infer gene function.

Keywords: gene function; genetics; genomics; high-throughput screening.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Genomics*
  • High-Throughput Screening Assays
  • Mutation
  • Parasites / genetics*
  • Parasitology / trends*
  • Phenotype
  • Small Molecule Libraries / chemistry
  • Small Molecule Libraries / metabolism
  • Transcriptome

Substances

  • Small Molecule Libraries