Interaction of a calix[4]arene derivative with a DOPC bilayer: biomolecular simulations towards chloride transport

Biochim Biophys Acta. 2014 Mar;1838(3):890-901. doi: 10.1016/j.bbamem.2013.11.021. Epub 2013 Dec 6.

Abstract

The ability of a calix[4]arene derivative (CX-1), bearing four protonated NH3(+) groups located in the upper rim and aliphatic tails in the lower rim, to interact with a 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) model bilayer and promote transmembrane chloride transport was investigated by molecular dynamics (MD) simulations. Unconstrained MD simulations show that the interaction of CX-1 with DOPC occurs via the NH3(+) groups, which are able to establish electrostatic interactions and multiple hydrogen bonds with the DOPC phosphate groups, while the aliphatic tails point towards the water phase (when CX-1 starts from the water phase) or to the membrane (when CX-1 is initially positioned within the bilayer). The interaction does not induce any relevant perturbation on the biophysical properties of the bilayer system (area per lipid, thickness, and hydration) apart from a systematic increase in the order parameter of the C2 carbon atom of the sn-1 lipid tail, meaning that the bilayer conserves its integrity. Since total internalization of CX-1 was not observed in the unconstrained MD time-scale, constant velocity steered molecular dynamics (SMD) simulations were performed in order to simulate the CX-1 permeation across the bilayer. At pulling velocities lower than 0.0075 nmps(-1), chloride transport was observed. The Potential of Mean Force (PMF), calculated with the weighted histogram analysis method, indicates a barrier of ca. 58kJmol(-1) for this mobile carrier to cross the membrane.

Keywords: Calixarene; Carrier mechanism; DOPC; Molecular dynamics simulation; Transmembrane chloride transport.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Calixarenes / chemistry
  • Calixarenes / metabolism*
  • Cell Membrane / metabolism*
  • Chlorides / chemistry
  • Chlorides / metabolism*
  • Ion Transport
  • Lipid Bilayers / chemistry
  • Lipid Bilayers / metabolism*
  • Models, Molecular
  • Molecular Dynamics Simulation*
  • Phenols / chemistry
  • Phenols / metabolism*
  • Phosphatidylcholines / chemistry
  • Phosphatidylcholines / metabolism*

Substances

  • Chlorides
  • Lipid Bilayers
  • Phenols
  • Phosphatidylcholines
  • calix(4)arene
  • Calixarenes
  • 1,2-oleoylphosphatidylcholine